Parental gene:

CFL1, ENSPPYG00000003047

Aliases:None
Description:cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874]
Organism:Orangutan (Pongo abelii)
Coordinates:11:10040576..10041517(+)


>ENSPPYG00000003047
GCCTCCGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAACGACATGAAGGTGCGTAAGTCTTCAACGCCAGAGGA
AGTGAAGAAGCGCAAGAAGGCGGTGCTCTTCTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGA
TTCTGGTGGGCGATGTGGGCCAGACTGTCGACGACCCCTACGCCACCTTTGTCAAGATGCTGCCAGATAAGGACTGCCGC
TATGCCCTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTTATCTTCTGGGCCCCCGAGTC
TGCGCCCCTTAAGAGCAAAATGATCTATGCCAGCTCCAAGGACGCCATCAAGAAGAAGNNNACAGGGATCAAGCATGAAT
TGCAAGCAAACTGCTACGAGGAGGTCAAGGACCGCTGCACCCTGGCAGAGAAGCTGGGGGGCAGTGCCGTCATCTCCCTG
GAGGGCAAGCCTTTG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 164 .77 RPM
SRP007412_cerebellum 78 .92 RPM
SRP007412_heart 28 .03 RPM
SRP007412_kidney 96 .36 RPM
SRP007412_liver 86 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000017334 ortholog_one2one 2 retrogenes
Canis familiaris ENSCAFG00000024955 ortholog_one2one 6 retrogenes
Callithrix jacchus ENSCJAG00000001916 ortholog_one2one 1 retrogene
Equus caballus ENSECAG00000019900 ortholog_one2one 1 retrogene
Felis catus ENSFCAG00000013272 possible_ortholog 3 retrogenes
Homo sapiens ENSG00000172757 ortholog_one2one 6 retrogenes
Gorilla gorilla ENSGGOG00000023183 ortholog_one2one 5 retrogenes
Myotis lucifugus ENSMLUG00000024685 ortholog_one2one 6 retrogenes
Macaca mulatta ENSMMUG00000019016 possible_ortholog 5 retrogenes
Mustela putorius furo ENSMPUG00000011502 ortholog_one2one 2 retrogenes
Nomascus leucogenys ENSNLEG00000005852 ortholog_one2one 5 retrogenes
Oryctolagus cuniculus ENSOCUG00000025604 possible_ortholog 4 retrogenes
Otolemur garnettii ENSOGAG00000016503 possible_ortholog 8 retrogenes
Pongo abelii ENSPPYG00000010727 within_species_paralog 1 retrogene
Pan troglodytes ENSPTRG00000003895 ortholog_one2one 5 retrogenes
Rattus norvegicus ENSRNOG00000020660 possible_ortholog 2 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000027968 ortholog_one2one 4 retrogenes
Tursiops truncatus ENSTTRG00000016931 ortholog_one2one 2 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pabe_316 83.95 98.18
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2. retro_pabe_325 89.70 100.00
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3. retro_pabe_386 67.52 90.91
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4. retro_pabe_1732 80.86 98.18
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5. retro_pabe_2747 85.88 50.30
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Download FASTA sequences of all ENSPPYG00000003047 retrocopies