Parental gene: | CFL1, ENSPPYG00000003047 |
| Aliases: | None |
| Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:10040576..10041517(+) |
>ENSPPYG00000003047
GCCTCCGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAACGACATGAAGGTGCGTAAGTCTTCAACGCCAGAGGA
AGTGAAGAAGCGCAAGAAGGCGGTGCTCTTCTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGA
TTCTGGTGGGCGATGTGGGCCAGACTGTCGACGACCCCTACGCCACCTTTGTCAAGATGCTGCCAGATAAGGACTGCCGC
TATGCCCTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTTATCTTCTGGGCCCCCGAGTC
TGCGCCCCTTAAGAGCAAAATGATCTATGCCAGCTCCAAGGACGCCATCAAGAAGAAGNNNACAGGGATCAAGCATGAAT
TGCAAGCAAACTGCTACGAGGAGGTCAAGGACCGCTGCACCCTGGCAGAGAAGCTGGGGGGCAGTGCCGTCATCTCCCTG
GAGGGCAAGCCTTTG
GCCTCCGGTGTGGCTGTCTCTGATGGTGTCATCAAGGTGTTCAACGACATGAAGGTGCGTAAGTCTTCAACGCCAGAGGA
AGTGAAGAAGCGCAAGAAGGCGGTGCTCTTCTGCCTGAGTGAGGACAAGAAGAACATCATCCTGGAGGAGGGCAAGGAGA
TTCTGGTGGGCGATGTGGGCCAGACTGTCGACGACCCCTACGCCACCTTTGTCAAGATGCTGCCAGATAAGGACTGCCGC
TATGCCCTCTATGATGCAACCTATGAGACCAAGGAGAGCAAGAAGGAGGACCTGGTGTTTATCTTCTGGGCCCCCGAGTC
TGCGCCCCTTAAGAGCAAAATGATCTATGCCAGCTCCAAGGACGCCATCAAGAAGAAGNNNACAGGGATCAAGCATGAAT
TGCAAGCAAACTGCTACGAGGAGGTCAAGGACCGCTGCACCCTGGCAGAGAAGCTGGGGGGCAGTGCCGTCATCTCCCTG
GAGGGCAAGCCTTTG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 164 .77 RPM |
| SRP007412_cerebellum | 78 .92 RPM |
| SRP007412_heart | 28 .03 RPM |
| SRP007412_kidney | 96 .36 RPM |
| SRP007412_liver | 86 .33 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000017334 | ortholog_one2one | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000024955 | ortholog_one2one | 6 retrogenes | |
| Callithrix jacchus | ENSCJAG00000001916 | ortholog_one2one | 1 retrogene | |
| Equus caballus | ENSECAG00000019900 | ortholog_one2one | 1 retrogene | |
| Felis catus | ENSFCAG00000013272 | possible_ortholog | 3 retrogenes | |
| Homo sapiens | ENSG00000172757 | ortholog_one2one | 6 retrogenes | |
| Gorilla gorilla | ENSGGOG00000023183 | ortholog_one2one | 5 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024685 | ortholog_one2one | 6 retrogenes | |
| Macaca mulatta | ENSMMUG00000019016 | possible_ortholog | 5 retrogenes | |
| Mustela putorius furo | ENSMPUG00000011502 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000005852 | ortholog_one2one | 5 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000025604 | possible_ortholog | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000016503 | possible_ortholog | 8 retrogenes | |
| Pongo abelii | ENSPPYG00000010727 | within_species_paralog | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000003895 | ortholog_one2one | 5 retrogenes | |
| Rattus norvegicus | ENSRNOG00000020660 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000027968 | ortholog_one2one | 4 retrogenes | |
| Tursiops truncatus | ENSTTRG00000016931 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_316 | 83.95 | 98.18 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_325 | 89.70 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_pabe_386 | 67.52 | 90.91 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_pabe_1732 | 80.86 | 98.18 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_pabe_2747 | 85.88 | 50.30 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000003047 retrocopies