RetrogeneDB ID: | retro_itri_1734 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393688.1:386672..387176(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000025580 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSSTOG00000027968 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 77.14 % |
Parental protein coverage: | 75.11 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | KNIILEEGKEILVGDV-GQTVDDPYATFVKML-PDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLK |
..IILEEGKE.L.G.V.GQT....Y.TFVK.L.PDKD..YALYD...ET.ESKKEDLVFIFWA.ESAPLK | |
Retrocopy | ESIILEEGKEVLLGEV<GQT-GHSYTTFVKVL<PDKDGCYALYDVSQETQESKKEDLVFIFWASESAPLK |
Parental | SKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGGSAVISLEGKPL-PPP-APCLEHLSPRP |
SK.IYA.SKD.IKKKLTGIK..L.ANCYEEVK.RCTLAEKLGG.AVISLEGKPL..PP.APCLEHL.... | |
Retrocopy | SKLIYARSKDVIKKKLTGIKYKLHANCYEEVKNRCTLAEKLGGNAVISLEGKPL>EPPPAPCLEHLAAPD |
Parental | AL-GGCRLPPSCQTGGAG-GIPAGGGHSLHPSCQT |
.L..GCRLPPSCQTGGAG.GIPA.GGHSLHPSCQT | |
Retrocopy | LL<LGCRLPPSCQTGGAG<GIPAEGGHSLHPSCQT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |