RetrogeneDB ID: | retro_ecab_442 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 18:10495584..10495911(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSECAG00000019900 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 57.02 % |
Parental protein coverage: | 66.87 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | LVGDVGQ-TVDDPYATFVKMLPDKDCRYALYDATYETKESKKED-LVFIFWAPESAPLKSKMIYASSKDA |
LVGDVG...VDDP...FVK...D..C...LY.AT.ET.E.K....L.FIF.APESAPLKS........D. | |
Retrocopy | LVGDVGR<AVDDPSSAFVKRQLDAVCCSVLYEATQETEENKRRP<LLFIFGAPESAPLKSR*RMPAPRDV |
Parental | IKKKLTGIKHELQANCYEEVKDRCTLAEKL-GGSAVISLEGKPL |
I..KLTGIK.EL.ANC.E..K..CT...KL.GGSA..SLEG.PL | |
Retrocopy | IR-KLTGIKLELRANCSEVIKGQCTVPGKL<GGSAATSLEGEPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 145 .33 RPM |
SRP021940_cerebellum | 0 .05 RPM | 530 .65 RPM |
SRP021940_embryo | 0 .05 RPM | 542 .42 RPM |
SRP021940_placental_villous | 0 .10 RPM | 451 .86 RPM |
SRP021940_synovial_membrane | 0 .05 RPM | 384 .52 RPM |
SRP021940_testis | 0 .00 RPM | 267 .92 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017334 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000024955 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000001916 | 1 retrocopy | |
Equus caballus | ENSECAG00000019900 | 1 retrocopy |
retro_ecab_442 ,
|
Felis catus | ENSFCAG00000013272 | 3 retrocopies | |
Homo sapiens | ENSG00000172757 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000023183 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024685 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000019016 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000011502 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005852 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016503 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000003047 | 5 retrocopies | |
Pan troglodytes | ENSPTRG00000003895 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000020660 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027968 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000016931 | 2 retrocopies |