RetrogeneDB ID: | retro_itri_144 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393408.1:3204647..3205127(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000022163 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSSTOG00000027968 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 95.68 % |
Parental protein coverage: | 72. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKM |
.AVSDG.IKVFNDMKVRKSSTPEEVKK.KKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKM | |
Retrocopy | MAVSDGIIKVFNDMKVRKSSTPEEVKKCKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKM |
Parental | LPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVK |
LPDKDC...LYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEV. | |
Retrocopy | LPDKDC---LYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQANCYEEVT |
Parental | DRCTLAEKLGGSAVISLEGKPL |
DRCTLAEKLGGSAVISLEGKPL | |
Retrocopy | DRCTLAEKLGGSAVISLEGKPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |