RetrogeneDB ID: | retro_pabe_386 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:50003445..50003893(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSPPYG00000003047 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 67.52 % |
Parental protein coverage: | 90.91 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | NDMKVRKSSTPEEVKKRKKAVLFC-LSEDKKNIILEEGKEILVGDVGQTVDDPYATF--VKMLPDKDCRY |
.D.K..KSST.EEVK.RKK.VLFC.LS.D..NII.EEG...L.G.VGQ.VD..Y.....VKMLPDKDC.Y | |
Retrocopy | DDKKEHKSSTAEEVKTRKKVVLFC<LSGDE-NIIVEEGSGTLAGEVGQAVDNSYTMVVKVKMLPDKDCHY |
Parental | ALYDATYETKESKKEDLVFIFWAPESAPL-KSKMIYASSKDAIKKKXTGIKHELQANCY-EEVKDRCTLA |
.L.DATYETK.S..EDLVFIF.AP.SAPL.KS.MIY.SSKD.IKKK.TGI.HEL.AN.Y..EVKD.CT.A | |
Retrocopy | VLCDATYETKVSQEEDLVFIF*APQSAPL<KSRMIYVSSKDTIKKKLTGILHELPANGY<QEVKDLCTQA |
Parental | EKL-GGSAVIS-LEGKP |
.KL..GS.VIS.L.GKP | |
Retrocopy | DKL<RGSTVIS<LQGKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 164 .77 RPM |
SRP007412_cerebellum | 0 .00 RPM | 78 .92 RPM |
SRP007412_heart | 0 .00 RPM | 28 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 96 .36 RPM |
SRP007412_liver | 0 .00 RPM | 86 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_287 |
Pan troglodytes | retro_ptro_236 |
Gorilla gorilla | retro_ggor_326 |
Macaca mulatta | retro_mmul_556 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000017334 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000024955 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000001916 | 1 retrocopy | |
Equus caballus | ENSECAG00000019900 | 1 retrocopy | |
Felis catus | ENSFCAG00000013272 | 3 retrocopies | |
Homo sapiens | ENSG00000172757 | 6 retrocopies | |
Gorilla gorilla | ENSGGOG00000023183 | 5 retrocopies | |
Myotis lucifugus | ENSMLUG00000024685 | 6 retrocopies | |
Macaca mulatta | ENSMMUG00000019016 | 5 retrocopies | |
Mustela putorius furo | ENSMPUG00000011502 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000005852 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000025604 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000016503 | 8 retrocopies | |
Pongo abelii | ENSPPYG00000003047 | 5 retrocopies | |
Pongo abelii | ENSPPYG00000010727 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003895 | 5 retrocopies | |
Rattus norvegicus | ENSRNOG00000020660 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027968 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000016931 | 2 retrocopies |