RetrogeneDB ID: | retro_itri_1456 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393493.1:2418125..2418611(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CFL1 | ||
Ensembl ID: | ENSSTOG00000027968 | ||
Aliases: | None | ||
Description: | cofilin 1 (non-muscle) [Source:HGNC Symbol;Acc:1874] |
Percent Identity: | 61.31 % |
Parental protein coverage: | 72. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAP |
.E...N...EEGKEIL..DVGQTVDDPYATFVKM..DK.C..ALY..T....E...EDLVFIFW.PESAP | |
Retrocopy | NERTLNYLREEGKEILE-DVGQTVDDPYATFVKMQLDKGCCCALYNTTCKN*E---EDLVFIFWVPESAP |
Parental | LKSKMIYASSKDAIKKKLTGIKHELQANCYEEVKDRCTLAEKLGG-SAVISLEGKPL-PPP-APCLEHLS |
L..KM.YASSKD.I.KKLT..KHELQANC..EV....TLAE.L...SAVISLE.KPL..PP.A.CLEHL. | |
Retrocopy | LRNKMVYASSKDTIDKKLTKVKHELQANCHKEVNNHHTLAEMLPD>SAVISLEDKPL>EPPSASCLEHLA |
Parental | -PRPAL--GGCRLPPSCQTGGAGGIPAG |
.P...L..GG....P........GIPAG | |
Retrocopy | >PQASLVCGGVQDDPFLPDWSS*GIPAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |