RetrogeneDB ID: | retro_btau_451 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 11:78187251..78187836(-) | ||
Located in intron of: | ENSBTAG00000031014 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSBTAG00000019603 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase B chain [Source:UniProtKB/Swiss-Prot;Acc:Q5E9B1] |
Percent Identity: | 81. % |
Parental protein coverage: | 58.98 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | SNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAE-KLGIHPSSCHGWILGEHGDSSVAVWSGVN |
SNPVDIL.YVTWKLSGLPKH.V.GS.CNLD.AR..Y.MAE.K....PS..HGWILGEH.DSSV..WS.VN | |
Retrocopy | SNPVDILIYVTWKLSGLPKHCVFGSRCNLDFARLHYFMAE<KNAFIPSH-HGWILGEHDDSSVVMWSEVN |
Parental | VAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYE-VIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVS |
VAG.SLQELNPEMGTDN.SENWKEVHKMVVE.AY..VIKLKG.T.WAI.LSVADLIESM.K.LSR.HPVS | |
Retrocopy | VAGISLQELNPEMGTDNHSENWKEVHKMVVENAYK<VIKLKGDTIWAIRLSVADLIESMMKSLSRSHPVS |
Parental | TMVK-GMYGIENEVFLSLPCILNARGLTSVINQKLKDEEVAQLKKSADTLWGIQKDLKDL |
..VK.GMYG.ENEVFLSLPCILNAR.LTSVINQKLKDEEVA.L.KSADTL.GIQKDLKDL | |
Retrocopy | KTVK<GMYGFENEVFLSLPCILNARELTSVINQKLKDEEVA*LRKSADTLSGIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .07 RPM | 127 .25 RPM |
ERP005899_muscle | 0 .05 RPM | 96 .87 RPM |
SRP017611_brain | 0 .00 RPM | 243 .01 RPM |
SRP017611_kidney | 0 .00 RPM | 692 .59 RPM |
SRP017611_liver | 0 .00 RPM | 344 .24 RPM |
SRP030211_testis | 0 .23 RPM | 38 .67 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Bos taurus | ENSBTAG00000008683 | 2 retrocopies | |
Bos taurus | ENSBTAG00000019603 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022015 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002565 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022058 | 2 retrocopies |