RetrogeneDB ID: | retro_sscr_37 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 2:12622387..12623392(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSSCG00000013171 | |
Aliases: | LDHB, LDH-B, LDH-H | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSSCG00000000576 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F1SR05] |
Percent Identity: | 96.3 % |
Parental protein coverage: | 96.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLKEKLIAPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGS |
MATLKEKLI.PVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGE.MDLQHGS | |
Retrocopy | MATLKEKLIVPVAEEETTIPNNKITVVGVGQVGMACAISILGKSLTDELALVDVLEDKLKGEIMDLQHGS |
Parental | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP | |
Retrocopy | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
Parental | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGV | |
Retrocopy | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGV |
Parental | SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQG |
SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQG | |
Retrocopy | SLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVQG |
Parental | MYGIENEVFLSLPCVLNARGLTSVINQKLKDLELVPLDNESQAI |
MYGIENEVFLSLPCVLNARGLTSVINQKLKD.E...L.N..... | |
Retrocopy | MYGIENEVFLSLPCVLNARGLTSVINQKLKDDEVAQLKNSADTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 8 .63 RPM | 19 .11 RPM |
SRP014902_testis | 48 .52 RPM | 119 .81 RPM |
SRP018288_heart | 381 .27 RPM | 903 .47 RPM |
SRP018288_kidney | 167 .36 RPM | 383 .78 RPM |
SRP018288_liver | 51 .17 RPM | 134 .16 RPM |
SRP018288_lung | 40 .93 RPM | 89 .61 RPM |
SRP018856_adipose | 537 .87 RPM | 1805 .17 RPM |
SRP035408_brain | 85 .50 RPM | 197 .30 RPM |
SRP035408_liver | 64 .17 RPM | 189 .96 RPM |