RetrogeneDB ID: | retro_amel_977 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192788.1:1354577..1355114(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000016175 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D2I1F1] |
Percent Identity: | 79.33 % |
Parental protein coverage: | 53.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | KHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDS |
KH.V.GS.C.LD.ARF.Y.MAEK.G.HPSSCHGWILGEHGDSSVAV.S.VN.AGVSLQELN.E..TDN.S | |
Retrocopy | KHCVTGSECSLDPARFHYFMAEKIGIHPSSCHGWILGEHGDSSVAV*SRVNAAGVSLQELNLETVTDNNS |
Parental | ENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCI |
ENWKE.H.MV.ES.YEV.KLKGYT.W..GLSV.D.I..MLKNLSRIHPVS.MVKG..G.ENEVFLSLPCI | |
Retrocopy | ENWKEMHNMVLESVYEVMKLKGYTKWTTGLSVVDPIKAMLKNLSRIHPVSVMVKGTHGMENEVFLSLPCI |
Parental | LNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
L.A.GLTSVINQKLKDDEV.QLKK.ADT.WDIQKDLKDL | |
Retrocopy | LIAQGLTSVINQKLKDDEVPQLKKRADTSWDIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |