RetrogeneDB ID: | retro_amel_882 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192710.1:1166877..1167435(+) | ||
Located in intron of: | ENSAMEG00000011889 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000016175 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D2I1F1] |
Percent Identity: | 73.12 % |
Parental protein coverage: | 54.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LSALPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMG |
LS.L.KH.VIG.GC.LD.ARF.Y.MA.K...HPS.C.G..LGEHGDS.VAVWS.VNVAG.SLQELN.EM. | |
Retrocopy | LSGLTKHPVIGNGCELDPARFHYHMAAKHVIHPSNCQG*TLGEHGDSHVAVWSRVNVAGISLQELNAEMR |
Parental | TDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGL----SVADLIESMLKNLSRIHPVSTMVKGMYGIEN |
.DNDSENWKE..KMVVESAYE.IKLKG.T..AIGL....SVA.L.ESM.KNL.RIHPV.TMVKGMYG.EN | |
Retrocopy | MDNDSENWKEENKMVVESAYEIIKLKGHTS*AIGLILDWSVANLTESMFKNLFRIHPVTTMVKGMYGTEN |
Parental | EVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLK |
EVFLS.PC.LNA..LT.VINQKLKD..V...KKS..TLWDIQKDLK | |
Retrocopy | EVFLSIPCMLNAQRLTTVINQKLKDVKVPPPKKSVNTLWDIQKDLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |