Parental gene:

LDHB, ENSSTOG00000022058

Aliases:None
Description:lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393358.1:5227665..5244542(+)


>ENSSTOG00000022058
ATGGCAACCCTCAAGGAAAAACTCATTGCGCCAGTTGCAGAAGAAGAGACCACAGTCCCAAACAATAAGATCACTGTAGT
GGGTGTTGGTCAAGTTGGTATGGCGTGTGCTATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCCCTGGTGGATG
TTTTGGAAGATAAGCTCAAAGGAGAAATGATGGATCTGCAGCATGGCAGCTTATTTCTTCAAACCCCTAAAATTGTGGCA
GATAAAGTTACTTCAGTGACTGTCAACAATGAAATGGTGGTCGTAACTGCAGGAGTCCGTCAGCAGGAGGGGGAGAGTCG
TCTCAATCTGGTGCAGAGAAATGTCAATGTCTTCAAATTCATTATTCCTCAGATTGTCAAGTACAGTCCCGATTGCATCA
TAATTGTGGTTTCCAACCCAGAATACTCAGTGGACATTCTTACGTATGTTACCTGGAAACTAAGTGGATTACCCAAACAC
CGAGTGATTGGAAGTGGGTGTAATCTGGATTCTGCTAGATTTCGCTATCTTATGGCTGAGAAACTTGGCATTCATCCCAG
CAGCTGCCACGGATGGATTCTGGGAGAACATGGCGACTCAAGTGTAGTGGCTGTGTGGAGTGGAGTGAACGTGGCTGGTG
TTTCTCTCCAGGAACTAAATCCAGAAATGGGAACAGACAGCGATAGTGAAAACTGGAAGGAAGTGCATAAGATGGTGGTT
GAAAGTGCCTATGAAGTCATCAAGCTGAAAGGATACACCAACTGGGCTATTGGGTTAAGTGTGGCTGACCTCATTGAATC
CATGTTTAAAAATCTATCCAGAATTCACCCAGTATCAACCATGGTAAAGGGGATGTATGGCATTGAAAATGAAGTCTTCC
TGAGCCTTCCATGTGTCCTCAATGCTCGGGGATTAACCAGTGTCATCAACCAGAAGCTGAAGGATGATGAGGTTGCTCAG
CTCAAGAAAAGTGCAGATACCCTGTGGGACATCCAGAAAGACCTAAAAGACCTGTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Bos taurus ENSBTAG00000019603 ortholog_one2one 4 retrogenes
retro_btau_1589, retro_btau_303, retro_btau_451, retro_btau_647,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Cavia porcellus ENSCPOG00000007138 ortholog_one2one 1 retrogene
retro_cpor_762,
Echinops telfairi ENSETEG00000019955 ortholog_one2one 1 retrogene
retro_etel_850,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Myotis lucifugus ENSMLUG00000012155 ortholog_one2many 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Oryctolagus cuniculus ENSOCUG00000022015 ortholog_one2one 1 retrogene
retro_ocun_805,
Sorex araneus ENSSARG00000002565 ortholog_one2one 1 retrogene
retro_sara_713,
Sus scrofa ENSSSCG00000000576 ortholog_one2many 1 retrogene
retro_sscr_37,
Ictidomys tridecemlineatus ENSSTOG00000000014 within_species_paralog 3 retrogenes
retro_itri_1396, retro_itri_1526, retro_itri_535,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_501 76.96 66.57
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2. retro_itri_648 83.33 81.66
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Download FASTA sequences of all ENSSTOG00000022058 retrocopies