RetrogeneDB ID: | retro_etel_850 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_175715:6250..6841(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSETEG00000019955 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 90.4 % |
Parental protein coverage: | 59.28 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATLKNKLIAPVAEEEALVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
MATLK.K.I.P.AEE.ALVPNNKITVV.VGQ.GMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS | |
Retrocopy | MATLKDKPIVPAAEE-ALVPNNKITVVRVGQAGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
Parental | LFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQ.PK.VADKD.SVTA.SK.VVVTAGVRQQE.ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP | |
Retrocopy | LFLQAPKTVADKDSSVTASSKTVVVTAGVRQQEAESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
Parental | VDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSS |
V.ILTYVTWKLSGLPKH..IGS.CNLDSARFRYLMAEKLGIHPSSCHGW.LG.HGDSS | |
Retrocopy | VAILTYVTWKLSGLPKHCMIGSDCNLDSARFRYLMAEKLGIHPSSCHGWMLGAHGDSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |