RetrogeneDB ID: | retro_ocun_805 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 15:60214349..60215221(+) | ||
Located in intron of: | ENSOCUG00000023825 | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000025106 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSOCUG00000022015 | ||
Aliases: | LDHB, LDH-B, LDH-H | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 96.58 % |
Parental protein coverage: | 87.92 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQR |
SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKI.VVT.GVRQQEGESRLNLVQR | |
Retrocopy | SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIMVVTVGVRQQEGESRLNLVQR |
Parental | NVNVFKFIIPQIVKYSPNCIIIVVSNPVDILTYVTWKL-SGLPKHRVIGSGCNLDSARFRYLMAEKLGIH |
NVNVFKFIIPQIVKYSPNCIIIVVSNPVDIL.YVTWKL.SGLPKH.VIGSGCNLDSARF.YLMAEKLGIH | |
Retrocopy | NVNVFKFIIPQIVKYSPNCIIIVVSNPVDILIYVTWKL<SGLPKHCVIGSGCNLDSARFHYLMAEKLGIH |
Parental | PSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWA |
PSSCHGWILGEHGDSSVA.WSGVNVAGVSLQELNPEMGTD.DSENWKEVHKMVV.SAYEVIKLKGYTNWA | |
Retrocopy | PSSCHGWILGEHGDSSVAFWSGVNVAGVSLQELNPEMGTDSDSENWKEVHKMVVDSAYEVIKLKGYTNWA |
Parental | IGLSVADLIESMLKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSAD |
IGLSVADLIESM.KNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSAD | |
Retrocopy | IGLSVADLIESMMKNLSRIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSAD |
Parental | TLWDIQKDLKDL |
TLWDIQKDLKDL | |
Retrocopy | TLWDIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 11 .09 RPM | 434 .39 RPM |
SRP017611_kidney | 21 .69 RPM | 720 .44 RPM |
SRP017611_liver | 1 .85 RPM | 49 .33 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Bos taurus | ENSBTAG00000019603 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015939 | 6 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022015 | 1 retrocopy |
retro_ocun_805 ,
|
Sorex araneus | ENSSARG00000002565 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022058 | 2 retrocopies |