RetrogeneDB ID: | retro_itri_648 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393309.1:93783..94599(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSSTOG00000022058 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 83.33 % |
Parental protein coverage: | 81.66 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | MATLKEKLIAPVAEEETTVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGS |
MATLKEKL.APVAEEE.TVPNNKITV.GVGQVGMACA.SILGKSLADEL.LVDVLEDKLK.EMMDLQ.GS | |
Retrocopy | MATLKEKLTAPVAEEEVTVPNNKITVLGVGQVGMACATSILGKSLADELPLVDVLEDKLK*EMMDLQYGS |
Parental | LFLQTPKIVADKVTSVTVNNEMVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP |
LFLQTPKIVADK..SVT.N...VVVTAGV.QQEGESRLNLVQRNVNVFKFIIP.IVKYSPDCIIIV.SNP | |
Retrocopy | LFLQTPKIVADKDYSVTANSKIVVVTAGVHQQEGESRLNLVQRNVNVFKFIIP*IVKYSPDCIIIVLSNP |
Parental | EYSVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVVAVWSGVN |
...VDILTYVTWKLSGLPKHRVIGSGCNLDSARF.YLMAEKLGIHPSSCH.WILGEHG.SS.VAV.SGVN | |
Retrocopy | ---VDILTYVTWKLSGLPKHRVIGSGCNLDSARFCYLMAEKLGIHPSSCHRWILGEHGKSS-VAV*SGVN |
Parental | VAGVSLQELNPEMGTDSDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMFKNLSRIH |
VAGV.LQELNPEMGTD.DS.N.K.VHKMVVESAYEVIK.KGYTNWA.GL...........N...I. | |
Retrocopy | VAGVFLQELNPEMGTDNDS*N*KKVHKMVVESAYEVIKKKGYTNWALGLTLLNPCVKSIQNSPSIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Bos taurus | ENSBTAG00000019603 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000019955 | 1 retrocopy | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000022015 | 1 retrocopy | |
Sorex araneus | ENSSARG00000002565 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000014 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000022058 | 2 retrocopies |
retro_itri_501, retro_itri_648 ,
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