Parental gene:

LDHB, ENSETEG00000019955

Aliases:None
Description:lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541]
Organism:Lesser hedgehog tenrec (Echinops telfairi)
Coordinates:GeneScaffold_2208:2754..54879(-)


>ENSETEG00000019955
ATGGCAACTCTTAAGAACAAGCTGATTGCACCGGTTGCAGAAGAAGAGGCCCTGGTTCCTAACAATAAGATCACTGTGGT
CGGGGTTGGACAAGTGGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCCCTGGCTGATGAACTGGCCCTTGTGGATG
TTTTGGAAGATAAACTCAAAGGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTCCAGACACCTAAAATCGTAGCA
GATAAAGATTACTCTGTGACGGCCAATTCGAAGATAGTGGTGGTGACTGCAGGAGTCCGTCAGCAAGAGGGGGAGAGTCG
GCTCAATCTGGTGCAGAGGAATGTCAATGTCTTCAAGTTCATTATTCCTCAGATCGTCAAGTACAGCCCCGACTGCATCA
TCATTGTGGTGTCCAACCCAGTGGATATTCTTACATACGTTACCTGGAAACTAAGTGGATTGCCCAAGCACCGTGTGATC
GGAAGTGGCTGTAACCTGGATTCTGCTAGATTTCGCTATCTGATGGCTGAAAAACTTGGCATTCATCCCAGCAGCTGCCA
CGGATGGATTTTGGGAGAGCATGGAGACTCGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGATGTATGGCATTGAGAATGAAGTCTTCCTGAGCCTCCCCT
GTATTCTGAATGCCCGGGGCTTGACCAGTGTTGTCAACCAGAAGCTGAAGGACGATGAGGTTGCTCAACTCAAGAAGAGT
GCAGACACTCTGTGGGACATCCAGAAGGACCTAAGAGACCTGTGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Bos taurus ENSBTAG00000019603 ortholog_one2one 4 retrogenes
retro_btau_1589, retro_btau_303, retro_btau_451, retro_btau_647,
Canis familiaris ENSCAFG00000012195 ortholog_one2many 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Choloepus hoffmanni ENSCHOG00000007658 ortholog_one2one 1 retrogene
retro_chof_1145,
Cavia porcellus ENSCPOG00000007138 ortholog_one2one 1 retrogene
retro_cpor_762,
Echinops telfairi ENSETEG00000007508 within_species_paralog 15 retrogenes
retro_etel_1091, retro_etel_1192, retro_etel_1243, retro_etel_1309, retro_etel_1439, retro_etel_1609, retro_etel_1870, retro_etel_1916, retro_etel_1969, retro_etel_1996, retro_etel_2209, retro_etel_361, retro_etel_392, retro_etel_828, retro_etel_884,
Felis catus ENSFCAG00000012639 possible_ortholog 1 retrogene
retro_fcat_462,
Homo sapiens ENSG00000111716 ortholog_one2one 1 retrogene
retro_hsap_4863,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Myotis lucifugus ENSMLUG00000012155 ortholog_one2many 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 ortholog_one2many 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mustela putorius furo ENSMPUG00000000172 possible_ortholog 5 retrogenes
retro_mputfur_1300, retro_mputfur_1561, retro_mputfur_492, retro_mputfur_539, retro_mputfur_549,
Oryctolagus cuniculus ENSOCUG00000022015 ortholog_one2one 1 retrogene
retro_ocun_805,
Pongo abelii ENSPPYG00000004356 ortholog_one2one 3 retrogenes
retro_pabe_1738, retro_pabe_1744, retro_pabe_3780,
Pan troglodytes ENSPTRG00000004762 ortholog_one2one 1 retrogene
retro_ptro_3237,
Sorex araneus ENSSARG00000002565 ortholog_one2one 1 retrogene
retro_sara_713,
Sus scrofa ENSSSCG00000000576 ortholog_one2many 1 retrogene
retro_sscr_37,
Ictidomys tridecemlineatus ENSSTOG00000022058 ortholog_one2one 2 retrogenes
retro_itri_501, retro_itri_648,
Tarsius syrichta ENSTSYG00000013759 ortholog_one2one 7 retrogenes
retro_tsyr_1130, retro_tsyr_1532, retro_tsyr_1860, retro_tsyr_2051, retro_tsyr_334, retro_tsyr_64, retro_tsyr_986,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_etel_850 90.40 59.28
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Download FASTA sequences of all ENSETEG00000019955 retrocopies