RetrogeneDB ID: | retro_ggor_635 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 11:28208873..28209424(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000028388 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSGGOG00000025853 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 90.27 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MASNKTTLQKMGKKQNGKSKK-VEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDC |
.ASNKTT.QKM.KKQNGK.KK.VEEAEPE.FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWE.EENL.C | |
Retrocopy | IASNKTTWQKMRKKQNGKNKK<VEEAEPE*FVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWESEENLHC |
Parental | PELIEAFLNSQKAGKEKDGTKRKSLSDSESDDSKSKKKRDAADKPRGFARGLDPERIIGATDSSGELMFL |
PELIEAFLNSQKAGKEK.GTKRKSLSDSESDDSKSKKKR.AADKPRGFARG.DPER.IGATD.SGELMFL | |
Retrocopy | PELIEAFLNSQKAGKEKVGTKRKSLSDSESDDSKSKKKREAADKPRGFARGRDPERVIGATDGSGELMFL |
Parental | MKWKDSDEADLVLA-KEANMKCPQIVIAFYEERLTWHSCPEDEAQ |
MKWKDSDEAD.VLA.KEANMK.PQI.IAFYEERLTWH.CPEDEAQ | |
Retrocopy | MKWKDSDEADSVLASKEANMKYPQIIIAFYEERLTWHACPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 24 .31 RPM |
SRP007412_cerebellum | 0 .00 RPM | 19 .46 RPM |
SRP007412_heart | 0 .00 RPM | 5 .22 RPM |
SRP007412_kidney | 0 .00 RPM | 38 .68 RPM |
SRP007412_liver | 0 .00 RPM | 24 .45 RPM |
SRP007412_testis | 0 .10 RPM | 88 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_766 |
Pan troglodytes | retro_ptro_537 |
Pongo abelii | retro_pabe_758 |
Callithrix jacchus | retro_cjac_869 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005969 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000000041 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000024063 | 3 retrocopies | |
Gorilla gorilla | ENSGGOG00000025853 | 6 retrocopies |
retro_ggor_1928, retro_ggor_2281, retro_ggor_2466, retro_ggor_2467, retro_ggor_635 , retro_ggor_845,
|
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006223 | 4 retrocopies |