RetrogeneDB ID: | retro_ggor_330 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 1:183974645..183974909(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSGGOG00000024063 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.84 % |
Parental protein coverage: | 50.26 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GEESKPKKKKEEVRIESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVV |
GEE.KPKK.KE....ESEKP.GFA.GL.PE.IIGAT.SSGELM..M.WKNSDEADL.P.KEANVKCPQVV | |
Retrocopy | GEEGKPKKMKE----ESEKP*GFAGGLAPEQIIGATYSSGELMIPMTWKNSDEADLFPGKEANVKCPQVV |
Parental | ISFYEERLTWHSYPSEDDDKKDDKN |
ISFYEER...HSYP...DDKKDDKN | |
Retrocopy | ISFYEER---HSYPKKEDDKKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 69 .63 RPM |
SRP007412_cerebellum | 0 .00 RPM | 66 .98 RPM |
SRP007412_heart | 0 .00 RPM | 13 .79 RPM |
SRP007412_kidney | 0 .04 RPM | 47 .55 RPM |
SRP007412_liver | 0 .00 RPM | 17 .28 RPM |
SRP007412_testis | 0 .00 RPM | 176 .84 RPM |