RetrogeneDB ID: | retro_itri_1764 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393732.1:447215..447494(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSSTOG00000006223 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 78.95 % |
Parental protein coverage: | 50.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RKSLSDSESDDSK-SKKKRDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADLVLAKEANMK |
.KSL...ESDDSK..KKKR.A.DKPRGFA.GLDPE.I.G.TDSSGELMFLMKWKDSDE..LVLAKEANMK | |
Retrocopy | KKSLPNNESDDSK<AKKKREATDKPRGFAGGLDPEQITGPTDSSGELMFLMKWKDSDETALVLAKEANMK |
Parental | CPQIVIAFYE-ERLTWHSCPEDEAQ |
.PQI.IAF...ERLT.HSCPEDEAQ | |
Retrocopy | RPQIIIAFLV>ERLT*HSCPEDEAQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000005969 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Gorilla gorilla | ENSGGOG00000025853 | 6 retrocopies | |
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006223 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000023986 | 3 retrocopies |