Parental gene:

CBX3, ENSSTOG00000006223

Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393288.1:2982259..2988201(+)


>ENSSTOG00000006223
ATGGCCTCCAATAAGACTACATTGCAAAAAATGGGAAAGAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTAGAAAAAGTCCTAGACCGACGTGTAGTAAATGGAAAGGTGGAATACTTTCTGAAGTGGAAAGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCATTTCTTAATTCTCAA
AAAGCTGGTAAAGAAAAAGATGGTACCAAAAGAAAATCTTTATCTGACAGCGAATCTGATGATAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGCTTTGCCAGAGGTCTTGATCCTGAACGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTTATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCAAAAGAAGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005969 ortholog_one2one 1 retrogene
retro_amel_1184,
Canis familiaris ENSCAFG00000002897 ortholog_one2one 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 ortholog_one2one 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Gorilla gorilla ENSGGOG00000025853 ortholog_one2one 6 retrogenes
retro_ggor_1928, retro_ggor_2281, retro_ggor_2466, retro_ggor_2467, retro_ggor_635, retro_ggor_845,
Loxodonta africana ENSLAFG00000006907 possible_ortholog 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Mus musculus ENSMUSG00000029836 possible_ortholog 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Rattus norvegicus ENSRNOG00000011814 ortholog_one2one 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,
Ictidomys tridecemlineatus ENSSTOG00000023986 within_species_paralog 3 retrogenes
retro_itri_1282, retro_itri_1599, retro_itri_1867,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_912 80.75 100.00
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2. retro_itri_1093 58.87 75.41
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3. retro_itri_1682 94.97 97.81
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4. retro_itri_1764 78.95 50.82
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Download FASTA sequences of all ENSSTOG00000006223 retrocopies