RetrogeneDB ID: | retro_ggor_3019 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | X:60541201..60541756(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSGGOG00000027034 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSGGOG00000024063 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.01 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MG.K.NKKKVEEVLEEEE.EYVVEKVLD..VVKGKVEYLLKWKGFSDEDNTWE.EENLDC.DLIAEFLQS | |
Retrocopy | MGEKLNKKKVEEVLEEEEKEYVVEKVLDHGVVKGKVEYLLKWKGFSDEDNTWESEENLDCLDLIAEFLQS |
Parental | QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEEVRIESEKPRGFARGLEPERIIGATDSSGELMFLM |
QKT.HETDKSEGGK.KADSDSEDKGEESKPK.KKEE....SEKPRGFARGLEPERIIGATDSSGE.MFLM | |
Retrocopy | QKTTHETDKSEGGKHKADSDSEDKGEESKPKEKKEE----SEKPRGFARGLEPERIIGATDSSGEVMFLM |
Parental | KWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
KWKNSDEADLVPAKEA.VKCPQVVISFYEERLTWHS.PSEDDDKKDDKN | |
Retrocopy | KWKNSDEADLVPAKEASVKCPQVVISFYEERLTWHS*PSEDDDKKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 2 .21 RPM | 69 .63 RPM |
SRP007412_cerebellum | 2 .13 RPM | 66 .98 RPM |
SRP007412_heart | 0 .44 RPM | 13 .79 RPM |
SRP007412_kidney | 0 .49 RPM | 47 .55 RPM |
SRP007412_liver | 0 .18 RPM | 17 .28 RPM |
SRP007412_testis | 3 .94 RPM | 176 .84 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4840 |