Parental gene:

CBX3, ENSGGOG00000025853

Aliases:None
Description:None
Organism:Gorilla (Gorilla gorilla)
Coordinates:7:26431522..26443100(+)


>ENSGGOG00000025853
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTGGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCGTTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCTGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCGAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 24 .31 RPM
SRP007412_cerebellum 19 .46 RPM
SRP007412_heart 5 .22 RPM
SRP007412_kidney 38 .68 RPM
SRP007412_liver 24 .45 RPM
SRP007412_testis 88 .58 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000005969 ortholog_one2one 1 retrogene
retro_amel_1184,
Canis familiaris ENSCAFG00000002897 ortholog_one2one 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 ortholog_one2one 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Gorilla gorilla ENSGGOG00000000041 within_species_paralog 1 retrogene
retro_ggor_1955,
Gorilla gorilla ENSGGOG00000024063 within_species_paralog 3 retrogenes
retro_ggor_2887, retro_ggor_3019, retro_ggor_330,
Loxodonta africana ENSLAFG00000006907 possible_ortholog 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Mus musculus ENSMUSG00000029836 possible_ortholog 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2many 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Rattus norvegicus ENSRNOG00000011814 ortholog_one2one 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2many 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2many 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,
Ictidomys tridecemlineatus ENSSTOG00000006223 ortholog_one2one 4 retrogenes
retro_itri_1093, retro_itri_1682, retro_itri_1764, retro_itri_912,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ggor_635 90.27 100.00
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2. retro_ggor_845 77.55 53.55
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3. retro_ggor_1928 73.27 55.19
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4. retro_ggor_2281 81.76 92.90
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5. retro_ggor_2466 95.71 88.52
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6. retro_ggor_2467 95.06 87.98
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Download FASTA sequences of all ENSGGOG00000025853 retrocopies