Parental gene:

PTP4A1, ENSCAFG00000002490

Aliases:None
Description:protein tyrosine phosphatase type IVA, member 1 [Source:HGNC Symbol;Acc:9634]
Organism:Dog (Canis familiaris)
Coordinates:12:27048500..27051779(+)


>ENSCAFG00000002490
ATGGCTCGAATGAACCGCCCAGCTCCTGTGGAAGTCACATACAAGAACATGAGATTTCTTATTACACACAATCCAACCAA
TGCGACCTTAAACAAATTTATAGAGGAACTTAAGAAGTATGGAGTTACAACAATAGTTAGAGTATGTGAAGCAACTTATG
ACACTACTCTTGTGGAGAAAGAAGGCATCCATGTTCTCGATTGGCCTTTTGATGATGGTGCACCACCATCCAACCAGATT
GTTGATGACTGGTTAAGTCTTGTAAAAATTAAGTTTCGTGAAGAACCTGGTTGTTGTATTGCTGTCCATTGTGTTGCAGG
CCTTGGGAGAGCTCCAGTGCTTGTTGCTCTAGCATTAATTGAAGGTGGAATGAAATATGAAGATGCAGTACAGTTCATAA
GACAAAAGCGGCGTGGAGCTTTTAACAGCAAGCAACTTTTGTATTTGGAGAAGTATCGTCCTAAAATGCGGCTGCGCTTC
AAAGACTCCAATGGTCATAGAAACAACTGTTGCATTCAATAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 26 .59 RPM
SRP017611_brain 21 .28 RPM
SRP017611_kidney 25 .69 RPM
SRP017611_liver 41 .84 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002438 ortholog_one2one 3 retrogenes
retro_amel_1102, retro_amel_1344, retro_amel_1590,
Bos taurus ENSBTAG00000002275 ortholog_one2one 3 retrogenes
retro_btau_1051, retro_btau_1186, retro_btau_859,
Callithrix jacchus ENSCJAG00000001743 ortholog_one2one 3 retrogenes
retro_cjac_2812, retro_cjac_4144, retro_cjac_910,
Dipodomys ordii ENSDORG00000009960 ortholog_one2one 6 retrogenes
retro_dord_148, retro_dord_244, retro_dord_355, retro_dord_375, retro_dord_696, retro_dord_92,
Erinaceus europaeus ENSEEUG00000006477 ortholog_one2one 3 retrogenes
retro_eeur_227, retro_eeur_626, retro_eeur_687,
Echinops telfairi ENSETEG00000008183 ortholog_one2one 6 retrogenes
retro_etel_1485, retro_etel_1681, retro_etel_1698, retro_etel_18, retro_etel_2153, retro_etel_668,
Felis catus ENSFCAG00000001199 ortholog_one2one 3 retrogenes
retro_fcat_1439, retro_fcat_335, retro_fcat_969,
Homo sapiens ENSG00000112245 ortholog_one2one 5 retrogenes
retro_hsap_2171, retro_hsap_3212, retro_hsap_479, retro_hsap_4798, retro_hsap_807,
Gorilla gorilla ENSGGOG00000022521 ortholog_one2one 7 retrogenes
retro_ggor_1723, retro_ggor_2180, retro_ggor_2251, retro_ggor_2986, retro_ggor_452, retro_ggor_662, retro_ggor_763,
Latimeria chalumnae ENSLACG00000007183 ortholog_one2many 1 retrogene
retro_lcha_90,
Loxodonta africana ENSLAFG00000006572 ortholog_one2one 8 retrogenes
retro_lafr_1054, retro_lafr_1120, retro_lafr_1133, retro_lafr_328, retro_lafr_670, retro_lafr_7, retro_lafr_780, retro_lafr_939,
Myotis lucifugus ENSMLUG00000001162 ortholog_one2many 1 retrogene
retro_mluc_264,
Macaca mulatta ENSMMUG00000002777 possible_ortholog 1 retrogene
retro_mmul_1720,
Monodelphis domestica ENSMODG00000018701 ortholog_one2many 5 retrogenes
retro_mdom_1630, retro_mdom_1864, retro_mdom_363, retro_mdom_729, retro_mdom_927,
Mustela putorius furo ENSMPUG00000003118 ortholog_one2one 1 retrogene
retro_mputfur_17,
Mus musculus ENSMUSG00000026064 ortholog_one2one 10 retrogenes
retro_mmus_1192, retro_mmus_1830, retro_mmus_1874, retro_mmus_1891, retro_mmus_2138, retro_mmus_2876, retro_mmus_2985, retro_mmus_3053, retro_mmus_3527, retro_mmus_575,
Nomascus leucogenys ENSNLEG00000000440 ortholog_one2one 6 retrogenes
retro_nleu_1111, retro_nleu_1159, retro_nleu_1681, retro_nleu_169, retro_nleu_407, retro_nleu_893,
Oryctolagus cuniculus ENSOCUG00000006311 ortholog_one2one 4 retrogenes
retro_ocun_225, retro_ocun_226, retro_ocun_24, retro_ocun_26,
Ochotona princeps ENSOPRG00000004938 possible_ortholog 4 retrogenes
retro_opri_246, retro_opri_511, retro_opri_692, retro_opri_973,
Pongo abelii ENSPPYG00000016743 ortholog_one2one 5 retrogenes
retro_pabe_2058, retro_pabe_255, retro_pabe_2660, retro_pabe_3732, retro_pabe_721,
Pan troglodytes ENSPTRG00000018314 ortholog_one2one 4 retrogenes
retro_ptro_1657, retro_ptro_2239, retro_ptro_3190, retro_ptro_360,
Rattus norvegicus ENSRNOG00000011771 ortholog_one2many 4 retrogenes
retro_rnor_1591, retro_rnor_2798, retro_rnor_494, retro_rnor_827,
Rattus norvegicus ENSRNOG00000046370 ortholog_one2many 4 retrogenes
retro_rnor_2349, retro_rnor_2868, retro_rnor_612, retro_rnor_971,
Tupaia belangeri ENSTBEG00000009956 possible_ortholog 14 retrogenes
retro_tbel_1216, retro_tbel_1392, retro_tbel_2167, retro_tbel_2236, retro_tbel_23, retro_tbel_2549, retro_tbel_2570, retro_tbel_2611, retro_tbel_3144, retro_tbel_3295, retro_tbel_3424, retro_tbel_4074, retro_tbel_4123, retro_tbel_869,
Tarsius syrichta ENSTSYG00000004632 ortholog_one2one 2 retrogenes
retro_tsyr_1011, retro_tsyr_1152,
Tursiops truncatus ENSTTRG00000004129 ortholog_one2one 6 retrogenes
retro_ttru_34, retro_ttru_450, retro_ttru_571, retro_ttru_642, retro_ttru_643, retro_ttru_69,
Vicugna pacos ENSVPAG00000004277 possible_ortholog 9 retrogenes
retro_vpac_167, retro_vpac_201, retro_vpac_275, retro_vpac_427, retro_vpac_476, retro_vpac_496, retro_vpac_535, retro_vpac_560, retro_vpac_583,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_206 80.35 100.00
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2. retro_cfam_593 69.05 71.68
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3. retro_cfam_1832 61.47 61.85
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Download FASTA sequences of all ENSCAFG00000002490 retrocopies