RetrogeneDB ID: | retro_mmus_3053 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 7:89855704..89856086(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSMUSG00000026064 | ||
Aliases: | Ptp4a1, AA415290, AU019864, C130021B01, Prl-1 | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 62.31 % |
Parental protein coverage: | 72.83 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | NRPAPVEVTYKNMRFLITHNPTNATL-NKFIEELKKYGVTTIVR--VCEATYDTTLVEKEGIHVLDWPFD |
N.P..VE.TY.NMRFLI.HNPT.AT..N......K.Y..T.IV...VCEAT.DT.LVEKEGI.VL.WPFD | |
Retrocopy | NHPFAVEFTYRNMRFLISHNPTCATR<NRVRGT*KNYRITMIVHT*VCEAT*DTALVEKEGIQVLGWPFD |
Parental | DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIE-GGMKYEDAV |
DG..PS.QIVDD.LSL...KFREE.GCC.AV.C.AGLGR.PVL.A....E.G.M.Y...V | |
Retrocopy | DGSSPSKQIVDDRLSLENMKFREELGCCMAVPCAAGLGRTPVLAAVKNEE<GAMAYKTKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .14 RPM | 23 .71 RPM |
SRP007412_cerebellum | 0 .13 RPM | 13 .42 RPM |
SRP007412_heart | 0 .00 RPM | 15 .44 RPM |
SRP007412_kidney | 0 .02 RPM | 15 .71 RPM |
SRP007412_liver | 0 .00 RPM | 46 .56 RPM |
SRP007412_testis | 0 .00 RPM | 28 .04 RPM |