RetrogeneDB ID: | retro_dord_244 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_6558:145234..145643(-) | ||
Located in intron of: | ENSDORG00000012537 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSDORG00000009960 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 79.43 % |
Parental protein coverage: | 79.31 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | ELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDDGA-PPSNQIVDDWLSLVKIKFREEPGCCIAVHC |
ELKKYGVTTI.RVCEATYDTTLVEKEGIH.L.WPFDDGA..PSNQIVDDWLSLV.IKF.E.PGCCI.... | |
Retrocopy | ELKKYGVTTIIRVCEATYDTTLVEKEGIHILNWPFDDGA<TPSNQIVDDWLSLVEIKFCEDPGCCITLQI |
Parental | VA-GLG-RAPVLVALALIEGGMKYEDAVQFIRQKRRGAFNSKQLLYLEKYRPKMRLRFKDANGHRNNCCI |
V...LG.RAP..VALA.IEGG.KYEDAVQFI.QK..G..NSKQLLYLEKY.PK..L.FKDANGHRNNCCI | |
Retrocopy | VL*ALG<RAP--VALARIEGGIKYEDAVQFI*QKWCGTLNSKQLLYLEKY*PKIWLCFKDANGHRNNCCI |
Parental | Q |
Q | |
Retrocopy | Q |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |