RetrogeneDB ID: | retro_mmus_1192 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:40449114..40449449(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSMUSG00000026064 | ||
Aliases: | Ptp4a1, AA415290, AU019864, C130021B01, Prl-1 | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 80.53 % |
Parental protein coverage: | 64.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARMNRP-APVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP |
MA.MN...APVEVTYKNM.FL.THNPTN.TL.KFIEE.KKYGVTTIVRVCEATYDTTL.EKEGIHVLDWP | |
Retrocopy | MAQMNQM<APVEVTYKNMQFLTTHNPTNVTLIKFIEEPKKYGVTTIVRVCEATYDTTLEEKEGIHVLDWP |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAP |
FDD.APPSNQIVDDW...........PGCCIAVHCVAGLGRAP | |
Retrocopy | FDDAAPPSNQIVDDWXXXXXXXXXXXPGCCIAVHCVAGLGRAP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 23 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 13 .42 RPM |
SRP007412_heart | 0 .00 RPM | 15 .44 RPM |
SRP007412_kidney | 0 .02 RPM | 15 .71 RPM |
SRP007412_liver | 0 .00 RPM | 46 .56 RPM |
SRP007412_testis | 0 .05 RPM | 28 .04 RPM |