RetrogeneDB ID: | retro_dord_696 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_57830:6694..7212(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ptp4a1 | ||
Ensembl ID: | ENSDORG00000009960 | ||
Aliases: | None | ||
Description: | protein tyrosine phosphatase 4a1 [Source:MGI Symbol;Acc:MGI:1277096] |
Percent Identity: | 84. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MARMNRPAPVEVTYKNMRFLITHNPTNAAXXXXXXXELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWP |
.A.MN.PAPVEVTY.NMRFLITHNPTNAA.......ELKKYGVTTIV.VCEA.YDTT.VEKEGIH.LDWP | |
Retrocopy | IAGMNHPAPVEVTYMNMRFLITHNPTNAALNKFIE-ELKKYGVTTIVKVCEAIYDTTVVEKEGIHILDWP |
Parental | FDDGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGRAPVLVALALIEGGMKYEDAVQFIRQKRRG |
FDDGAP.SNQIVDDWLSLVKIKF.EE.GCCI.V.CVAGLGRAPVLVALALIEGGMK.EDAVQFIRQK..G | |
Retrocopy | FDDGAPLSNQIVDDWLSLVKIKFHEETGCCITVRCVAGLGRAPVLVALALIEGGMK*EDAVQFIRQKQHG |
Parental | AFNSKQLLYLEKYR-PKMRLRFKDANGHRNNCCIQ |
AFNSKQLLYLEKY..PKM.L.FKDA.GHRNNCCIQ | |
Retrocopy | AFNSKQLLYLEKYH<PKMWLCFKDAKGHRNNCCIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |