RetrogeneDB ID: | retro_ggor_2251 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 5:41507871..41508315(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PTP4A1 | ||
Ensembl ID: | ENSGGOG00000022521 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.55 % |
Parental protein coverage: | 85.63 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ARMNRPAPVEVTYKNMRFLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFD |
A.MNR.APVE..Y.NMRFLITHNPTNATLNKF.EE.KKYGVTT.V.VC.ATYD...VEKEGIHVLDWPFD | |
Retrocopy | AIMNRLAPVEISYENMRFLITHNPTNATLNKFTEEIKKYGVTTLV*VCDATYDKAPVEKEGIHVLDWPFD |
Parental | DGAPPSNQIVDDWLSLVKIKFREEPGCCIAVHCVAGLGSRAPVLVALALIEGGMKYEDAVQFIRQKRRGA |
DGAP..NQIVDDWL.L.K.KFREEPGCC.AVHCV..LG.RAPVLVALALIE.GMKY.DAVQFIRQKRRG. | |
Retrocopy | DGAPSPNQIVDDWLNLLKTKFREEPGCCVAVHCVVELG-RAPVLVALALIECGMKYVDAVQFIRQKRRGV |
Parental | FNSKQLLYL |
.NSKQLLYL | |
Retrocopy | LNSKQLLYL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .43 RPM | 31 .51 RPM |
SRP007412_cerebellum | 0 .71 RPM | 22 .89 RPM |
SRP007412_heart | 0 .22 RPM | 9 .41 RPM |
SRP007412_kidney | 0 .20 RPM | 61 .58 RPM |
SRP007412_liver | 0 .29 RPM | 239 .30 RPM |
SRP007412_testis | 0 .41 RPM | 138 .82 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1754 |
Pan troglodytes | retro_ptro_1212 |
Pongo abelii | retro_pabe_1507 |