RetrogeneDB ID: | retro_cpor_1114 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_47:2938689..2939056(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000011774 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSCPOG00000005584 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.25 % |
Parental protein coverage: | 99.21 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MPKSKELVSSSSSGSDSDSEVD-KKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSR-DDNMFQIGK |
MPKSKELV.SSSSG.DSDSEVD..K.K..K..APEKPVKKQ.TGET.R.LS.SK.SS.SR..DNMFQIGK | |
Retrocopy | MPKSKELVPSSSSGNDSDSEVD<QKVKEEK--APEKPVKKQNTGETLRTLSPSKPSS-SR<EDNMFQIGK |
Parental | MRYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRK |
MRYVSVR.F.GKVLIDIRE.WMDPEG.MKPGRKG.SLNPEQWSQLKE.ISDID.AVRK | |
Retrocopy | MRYVSVRGFTGKVLIDIRESWMDPEGGMKPGRKGVSLNPEQWSQLKEHISDIDEAVRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .12 RPM | 68 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .84 RPM |
SRP017611_liver | 0 .00 RPM | 50 .53 RPM |
SRP040447_lung | 0 .00 RPM | 34 .86 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 15 .16 RPM |