RetrogeneDB ID: | retro_mmul_2318 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:8947837..8948216(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3983 | ||
Ensembl ID: | ENSMMUG00000011470 | ||
Aliases: | None | ||
Description: | activated RNA polymerase II transcriptional coactivator p15 [Source:RefSeq peptide;Acc:NP_001248140] |
Percent Identity: | 86.72 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQ-SSSSRDDNMFQIGKM |
MP.SKELVSSSSSGSDSDSEVDKKLKRKKQVAPEK..KKQKTGETSRAL.SS...S.SSRDDN.FQIGKM | |
Retrocopy | MPQSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKSIKKQKTGETSRAL-SSSK>SGSSRDDNKFQIGKM |
Parental | RYVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL |
RY.SV..FKGKVL.DIREYWMDP.GEMKPGRK.ISLNPEQWSQLKEQIS.IDDAV.KL | |
Retrocopy | RYLSVQGFKGKVLMDIREYWMDPDGEMKPGRKDISLNPEQWSQLKEQISVIDDAVQKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 4 .48 RPM | 95 .80 RPM |
SRP007412_brain_prefrontal_cortex | 1 .75 RPM | 63 .94 RPM |
SRP007412_cerebellum | 3 .75 RPM | 57 .02 RPM |
SRP007412_heart | 0 .35 RPM | 32 .03 RPM |
SRP007412_kidney | 0 .00 RPM | 38 .03 RPM |
SRP007412_liver | 0 .20 RPM | 10 .25 RPM |
SRP007412_testis | 0 .15 RPM | 15 .53 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3934 |
Gorilla gorilla | retro_ggor_2645 |
Pongo abelii | retro_pabe_124 |