RetrogeneDB ID: | retro_mmul_993 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 13:60872645..60873026(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3983 | ||
Ensembl ID: | ENSMMUG00000011470 | ||
Aliases: | None | ||
Description: | activated RNA polymerase II transcriptional coactivator p15 [Source:RefSeq peptide;Acc:NP_001248140] |
Percent Identity: | 96.85 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MPKSKELVSSSSSGSDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMR |
.PKSKELVSSSSSG.DSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMR | |
Retrocopy | VPKSKELVSSSSSGNDSDSEVDKKLKRKKQVAPEKPVKKQKTGETSRALSSSKQSSSSRDDNMFQIGKMR |
Parental | YVSVRDFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL |
YVSV.DFK.KVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL | |
Retrocopy | YVSV*DFKSKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKEQISDIDDAVRKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 4 .15 RPM | 95 .80 RPM |
SRP007412_brain_prefrontal_cortex | 1 .43 RPM | 63 .94 RPM |
SRP007412_cerebellum | 2 .13 RPM | 57 .02 RPM |
SRP007412_heart | 1 .06 RPM | 32 .03 RPM |
SRP007412_kidney | 2 .93 RPM | 38 .03 RPM |
SRP007412_liver | 1 .15 RPM | 10 .25 RPM |
SRP007412_testis | 0 .60 RPM | 15 .53 RPM |