RetrogeneDB ID: | retro_cpor_854 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_3:33606892..33607262(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SUB1 | ||
Ensembl ID: | ENSCPOG00000005584 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 61.54 % |
Parental protein coverage: | 98.43 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | PKSKELVSSSSSGSDSDSEV-DKKLKRKKQVAPEKPVKKQKTGETS-RALSSSKQSSSSRDDNMFQIG-K |
PKS.ELV...S..SDSDS.V.DKKLKRKKQV...KPVK.QKT.ETS.R.L.S.KQS.S.R..N.F..G.K | |
Retrocopy | PKSRELVAARSFRSDSDSKV<DKKLKRKKQVVSAKPVKRQKTPETS<RTLPSCKQSGSCRANNVFWAG<K |
Parental | MRYVSVR-DFKGKVLIDIREYWMDPEGEMKPGRKGISLNPEQWSQLKE-QISDIDDAVRK |
..Y..VR.DF..K...D.RE..M.PEGEMKP.R.G..LNPEQ..QLKE..ISD.D..VRK | |
Retrocopy | RKYGRVR<DFIEKSPTDTRE*QMHPEGEMKPERRGFALNPEQRRQLKE<VISDTDLVVRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 68 .39 RPM |
SRP017611_kidney | 0 .00 RPM | 38 .84 RPM |
SRP017611_liver | 0 .00 RPM | 50 .53 RPM |
SRP040447_lung | 0 .00 RPM | 34 .86 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 15 .16 RPM |