RetrogeneDB ID: | retro_pabe_2354 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:141597341..141597718(-) | ||
Located in intron of: | ENSPPYG00000014149 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL7L1 | ||
Ensembl ID: | ENSPPYG00000016619 | ||
Aliases: | None | ||
Description: | 60S ribosomal protein L7-like 1 [Source:RefSeq peptide;Acc:NP_001124607] |
Percent Identity: | 74.05 % |
Parental protein coverage: | 51.59 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | FSGVFVKVTPQNLKMLRIVEPYVTW-GFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVIC |
FS.V.VKVTPQ.LK....VE.YVTW.GFPNLKSV.ELILKR.QAKVKNKTIP..DN.V.EE.LG.FGVIC | |
Retrocopy | FSVVSVKVTPQSLK----VETYVTW<GFPNLKSVQELILKRVQAKVKNKTIPPSDNIVTEEYLGRFGVIC |
Parental | LEDLIHEIAFPGKHFQEISWFLRPFHLSVARHATKNRVGFLKEMGTPGYRGERINQLIRQL |
LEDL.HE..FPGK.FQEISWFL.PF.LS.A.HAT.NR..F.K.MG.PGY.GE.INQLI.QL | |
Retrocopy | LEDLRHEMVFPGKNFQEISWFLCPFYLSTAHHATNNRMDFFKDMGSPGYQGEHINQLILQL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 86 .53 RPM |
SRP007412_cerebellum | 0 .00 RPM | 71 .74 RPM |
SRP007412_heart | 0 .00 RPM | 35 .79 RPM |
SRP007412_kidney | 0 .00 RPM | 77 .63 RPM |
SRP007412_liver | 0 .00 RPM | 51 .56 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2845 |
Pan troglodytes | retro_ptro_1927 |