RetrogeneDB ID: | retro_hsap_946 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 12:3578115..3578459(+) | ||
Located in intron of: | ENSG00000111218 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000243507 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS26 | ||
Ensembl ID: | ENSG00000197728 | ||
Aliases: | RPS26, DBA10, S26 | ||
Description: | ribosomal protein S26 [Source:HGNC Symbol;Acc:10414] |
Percent Identity: | 75.86 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVK |
MTKKRRN...AKKG.GHV..I.C.NCA.CVP..KAIKKF.I.N.VEAAAVRDISEA.VF.AYVLPKL.VK | |
Retrocopy | MTKKRRN*RYAKKGHGHVLSIHCMNCAQCVPDNKAIKKFII*NTVEAAAVRDISEARVFHAYVLPKL*VK |
Parental | LHYCVS-CAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM |
L..CVS.CAIHSKVVRNRS.EA.KD.TPP..FRP..AA.RPPPKPM | |
Retrocopy | LYSCVS<CAIHSKVVRNRSSEASKDQTPPS*FRPSRAASRPPPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 5 .80 RPM |
bodymap2_adrenal | 0 .00 RPM | 15 .78 RPM |
bodymap2_brain | 0 .00 RPM | 3 .49 RPM |
bodymap2_breast | 0 .00 RPM | 4 .53 RPM |
bodymap2_colon | 0 .00 RPM | 7 .99 RPM |
bodymap2_heart | 0 .00 RPM | 32 .47 RPM |
bodymap2_kidney | 0 .00 RPM | 17 .50 RPM |
bodymap2_liver | 0 .00 RPM | 41 .28 RPM |
bodymap2_lung | 0 .00 RPM | 163 .82 RPM |
bodymap2_lymph_node | 0 .00 RPM | 112 .86 RPM |
bodymap2_ovary | 0 .00 RPM | 13 .15 RPM |
bodymap2_prostate | 0 .00 RPM | 87 .12 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 15 .50 RPM |
bodymap2_testis | 0 .11 RPM | 2 .92 RPM |
bodymap2_thyroid | 0 .00 RPM | 6 .44 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 128 .13 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_809 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |