RetrogeneDB ID: | retro_cpor_173 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_1:34038218..34038539(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000023630 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70.64 % |
Parental protein coverage: | 94.78 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | NNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDGYVLPKLYVKLHYCVS |
NN..AKKG.G.VQP..CTNCA...PKDKAIK.FVI.NIVEA...RD.SEASV...YVLPKLY.KL.YCVS | |
Retrocopy | NNSHAKKGHGYVQPAHCTNCAKWIPKDKAIKTFVIQNIVEAN--RDVSEASVLNNYVLPKLYMKLRYCVS |
Parental | CAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM |
.AIH..V.RN.SREA.KD.TPPP..RPAGAA..PP.KPM | |
Retrocopy | HAIHNQVARNQSREAPKDCTPPP*LRPAGAALQPPSKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .23 RPM | 48 .72 RPM |
SRP017611_kidney | 1 .57 RPM | 96 .31 RPM |
SRP017611_liver | 0 .78 RPM | 83 .66 RPM |
SRP040447_lung | 0 .28 RPM | 131 .70 RPM |
SRP040447_skeletal_muscle | 0 .07 RPM | 157 .38 RPM |