RetrogeneDB ID:

retro_ptro_74

Retrocopy
location
Organism:Chimpanzee (Pan troglodytes)
Coordinates:15:32072425..32072770(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSPTRG00000024159
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPS26
Ensembl ID:ENSPTRG00000005075
Aliases:None
Description:Pan troglodytes ribosomal protein S26 (RPS26), mRNA. [Source:RefSeq mRNA;Acc:NM_001252589]


Retrocopy-Parental alignment summary:






>retro_ptro_74
ATGACAAAGAAAAGAAGGAACAATGGTCGTGCCAAAAAGGGCCGCGGCCACGTGCAGCCTATTCGCTGCACTAACTGTGC
CCGATGCGTGCCCAAGGACAAGGCCATTAAGAAATTCGTCATTCGAAACATAGTGGAGGCCGCAGCAGTCAGGGACATTT
CTGAAGCGAGCGTCTTCGATGCCTATGTGCTTCCCAAGCTGTATGTGAAGCTACATTACTGTGTGAGTTGTGCAATTCAC
AGCAAAGTAGTCAGGAATCGATCTCGTGAAGCCCGCAAGGACCGAACACCCCCACCCCGATTTAGACCTGCGGGTGCTGC
CCCACGTCCCCCACCAAAGCCCATG

ORF - retro_ptro_74 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 100. %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVK
MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVK
RetrocopyMTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVK
ParentalLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM
LHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM
RetrocopyLHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP007412_brain_prefrontal_cortex 2 .06 RPM 171 .92 RPM
SRP007412_cerebellum 0 .04 RPM 72 .34 RPM
SRP007412_heart 0 .06 RPM 71 .00 RPM
SRP007412_kidney 0 .00 RPM 193 .63 RPM
SRP007412_liver 0 .00 RPM 90 .25 RPM
SRP007412_testis 0 .00 RPM 17 .39 RPM
Pan troglodytes was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ptro_74 retrocopy.
Pan troglodytes was not studied using FANTOM5 data.
retro_ptro_74 was not experimentally validated.

Retrocopy orthology:
Retrocopy retro_ptro_74 has 0 orthologous retrocopies within eutheria group .


Parental genes homology:
Parental genes homology involve 21 parental genes, and 184 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000032607 retrocopies
Bos taurus ENSBTAG000000388963 retrocopies
Choloepus hoffmanni ENSCHOG0000000148910 retrocopies
Cavia porcellus ENSCPOG000000236306 retrocopies
Dipodomys ordii ENSDORG000000011512 retrocopies
Echinops telfairi ENSETEG0000000451035 retrocopies
Felis catus ENSFCAG0000001397710 retrocopies
Homo sapiens ENSG0000019772813 retrocopies
Gorilla gorilla ENSGGOG000000115666 retrocopies
Loxodonta africana ENSLAFG000000133298 retrocopies
Myotis lucifugus ENSMLUG0000002996810 retrocopies
Macaca mulatta ENSMMUG000000170427 retrocopies
Mus musculus ENSMUSG000000253621 retrocopy
Ochotona princeps ENSOPRG000000057213 retrocopies
Pongo abelii ENSPPYG0000000464216 retrocopies
Pan troglodytes ENSPTRG00000005075 1 retrocopy
retro_ptro_74 ,
Pteropus vampyrus ENSPVAG0000000755915 retrocopies
Rattus norvegicus ENSRNOG000000055171 retrocopy
Sus scrofa ENSSSCG000000003742 retrocopies
Ictidomys tridecemlineatus ENSSTOG0000001055912 retrocopies
Tursiops truncatus ENSTTRG0000001501216 retrocopies



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