RetrogeneDB ID: | retro_cpor_48 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_28:9323813..9324134(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000023174 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000023630 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.65 % |
Parental protein coverage: | 74.78 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | CVPKDKAIKKFVIRNIVEAAAVRDISEASVFDGYVLPKLYVKLHYCVSCAIHSKVVRNRSREARKDRTPP |
C..K.KAIKKFVI.N..E.AA.R..S..SV....VL....VKLH.CVSCA.H..VV.N.S.EA.K..... | |
Retrocopy | CMTKEKAIKKFVIGNMAESAAIRVCSKVSVLKAFVLRVVCVKLHCCVSCALHRTVVSNQSCEAQKEQKLR |
Parental | PRFRPAGAAPRPPPKP |
..F.PA.AAP.P.PKP | |
Retrocopy | SLFSPAVAAPQPLPKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 96 .31 RPM |
SRP017611_liver | 0 .00 RPM | 83 .66 RPM |
SRP040447_lung | 0 .00 RPM | 131 .70 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 157 .38 RPM |