RetrogeneDB ID: | retro_btau_724 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:50622670..50623015(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.67830 | ||
Ensembl ID: | ENSBTAG00000038896 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S26 [Source:RefSeq peptide;Acc:NP_001015561] |
Percent Identity: | 91.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | QTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVK |
.TKKRRNN...KKGRGHVQPIRCTNCA.CVPKDKAIKK.VIRNIVEAAAVRDISEASVFDAYVLPKLYVK | |
Retrocopy | KTKKRRNNVVQKKGRGHVQPIRCTNCAQCVPKDKAIKKLVIRNIVEAAAVRDISEASVFDAYVLPKLYVK |
Parental | LHYCVSCAIHSKVVRNRSREARKDRTPPPRFRPAGAAPRPPPKPM |
LH.CVSCAIHSKVVRNRSREARKDRTP.P.FRP.GAAPRPPPKPM | |
Retrocopy | LHCCVSCAIHSKVVRNRSREARKDRTPSP*FRPSGAAPRPPPKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 86 .15 RPM |
ERP005899_muscle | 0 .00 RPM | 796 .85 RPM |
SRP017611_brain | 0 .00 RPM | 69 .62 RPM |
SRP017611_kidney | 0 .00 RPM | 126 .55 RPM |
SRP017611_liver | 0 .00 RPM | 97 .18 RPM |
SRP030211_testis | 0 .11 RPM | 129 .09 RPM |