RetrogeneDB ID: | retro_cpor_134 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_0:50734578..50734912(+) | ||
Located in intron of: | ENSCPOG00000010528 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCPOG00000023630 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.39 % |
Parental protein coverage: | 97.39 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KRRNNGRAKKGRGHVQPIRC-TNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDGYVLPKLYVKLH |
K.RNN..A.K..GH.QPI.C...C..C...D.AI...VI...V.AAA..D.SEASV.D..VLP.LYVKLH | |
Retrocopy | KKRNNAHA*KSHGHMQPIHCKSSCIWCMSGDNAIR-LVIQSKVLAAAIKDVSEASVADTCVLPQLYVKLH |
Parental | YCVSCAIHS-KVVRNRSREARKDRTPPPRFRPAGA-APRPPPKPM |
YC.S.AIH...VVRNRS..A.K...PPP.F.P..A..PRPPPKP. | |
Retrocopy | YCMSYAIHA<RVVRNRSHKAQKEQMPPPQFGPTYA<CPRPPPKPV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 48 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 96 .31 RPM |
SRP017611_liver | 0 .00 RPM | 83 .66 RPM |
SRP040447_lung | 0 .00 RPM | 131 .70 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 157 .38 RPM |