RetrogeneDB ID: | retro_itri_1145 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393386.1:4647885..4648306(+) | ||
Located in intron of: | ENSSTOG00000003026 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSSTOG00000021923 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 68.28 % |
Parental protein coverage: | 97.24 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | MKFNPFVTSDR-SKNRKRHFNAPSHIRRKI-MSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIG |
.KFN.FVT....SK...RHFN.P....RKI..SSPLSKEL.QKY...S.P..KD.EV.VV.GHYKGQQIG | |
Retrocopy | IKFNGFVTYEK>SKSQRRHFNIPPNTCRKI<RSSPLSKELKQKYRASSLPV*KDGEVYVVGGHYKGQQIG |
Parental | K-VVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDR-KKILERKAKSRQVGKEKGKYK |
K.VVQVYRKKY...IE.V..EK.NGT..HV.IHPSKVV.TRLKLDKD..KKILE.KAKS.Q.GK.K..YK | |
Retrocopy | K<VVQVYRKKYGMNIE*V*WEKVNGTAIHVCIHPSKVVVTRLKLDKDA<KKILEWKAKSHQIGKGKSRYK |
Parental | EETIE |
EETIE | |
Retrocopy | EETIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |