RetrogeneDB ID: | retro_itri_811 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393327.1:94311..94628(+) | ||
Located in intron of: | ENSSTOG00000014612 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSSTOG00000021923 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 61.68 % |
Parental protein coverage: | 72.41 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | KYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREK-ANGT-TVHVGIHPSKVVITR |
K.N..S.....D.EVQVV.GH.KG.QIGKVV..YR.K.V..IE.......ANGT..VHV.IHP..V.ITR | |
Retrocopy | KHNF*SVCNQRDNEVQVV*GHCKG*QIGKVVWIYRNKLVMCIECGDGKR<ANGTRAVHVSIHPRMVIITR |
Parental | LKLDKDRKKILERKAKSRQVGKEKGKYKEETIEKMQE |
LKLDKDRKKIL..K.KS...GKEKGKYKE.TIE...E | |
Retrocopy | LKLDKDRKKILKWKVKSC*IGKEKGKYKEKTIEDTGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |