RetrogeneDB ID: | retro_itri_1670 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393622.1:228311..228742(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSSTOG00000021923 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 60.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | MKFNPFVTSDRSKN-RKRHFNA-PSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIG |
MKFNPF.TS..SKN.RKRHFNA.PS.I.R.I..SPLS..L.QK..V....I..DDE.Q.V....KGQQ.G | |
Retrocopy | MKFNPFMTSNISKN<RKRHFNA>PSNIHRNITFSPLSTKLKQKDRV*CRSIPEDDEFQSVQRY*KGQQVG |
Parental | KVVQVYRKKYVIYIERVQ-REKANGTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYKE |
.V.QVYRKKYVIY...VQ.....NGT...V..HPSKVV....K......KIL..K.KS.QVGKE.GKYKE | |
Retrocopy | QVDQVYRKKYVIYTKQVQ<AKMTNGTAAQVCTHPSKVVV-*AKIG*RQVKILD*KCKSCQVGKENGKYKE |
Parental | ETIEKMQE |
.TIEKMQE | |
Retrocopy | GTIEKMQE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |