RetrogeneDB ID: | retro_itri_1206 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393400.1:5332936..5333321(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSSTOG00000021923 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 75.97 % |
Parental protein coverage: | 87.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFN..VTSD.SKN.KRHF.APSHIRRKI.SSPLSKELRQKY...SMPI.KDDEVQVV..H.KGQ.IGKV | |
Retrocopy | MKFNLVVTSDQSKNLKRHFFAPSHIRRKIISSPLSKELRQKYHA*SMPIQKDDEVQVV*RHDKGQVIGKV |
Parental | VQVYRKKYVIYIERVQREKANGTTVHVGIHPSKV-VITRL-KLDKDRKKILERKAKSRQ |
.Q.YRKKY.IYIE.V..EKAN.TTV.VGIHPSKV.VI.RL..LDK..KKIL.RKAK..Q | |
Retrocopy | IQFYRKKYAIYIEQVEWEKANITTVPVGIHPSKV>VIIRLTTLDKEHKKILKRKAKFHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |