RetrogeneDB ID: | retro_cpor_1161 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_51:3589323..3589746(+) | ||
Located in intron of: | ENSCPOG00000009692 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSCPOG00000001315 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 56.76 % |
Parental protein coverage: | 99.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 4 |
Parental | MKFNPFVTSDRSKNRKRH-FNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGK |
MKFN.F......K..K...F..PSH..RK..S..L.KELRQK......PI.K..E.QVVRGH.K.QQ.GK | |
Retrocopy | MKFNLFMLYNEAKTIKSI>FSVPSHVHRKSVSCFLYKELRQKLTIQYIPI*KHGEAQVVRGHHKIQQNGK |
Parental | VVQVYR-KKYVIYIERVQREKANGTTVHVGIHPSKVVITRLK-LDKDRKKILERKAKSRQVGKEKGKYKE |
VVQVYR.K.Y.IY.E..Q.EKAN.T.VH..I.PSKVVIT.LK.L.K..KKIL..KA......K.KG.YKE | |
Retrocopy | VVQVYR<KEYIIYTEHLQ*EKANNTAVHSSINPSKVVITKLK>LNKA*KKILQ*KA---ELIKKKGSYKE |
Parental | -ETIEKMQ |
.ETIE..Q | |
Retrocopy | <ETIENIQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 192 .45 RPM |
SRP017611_kidney | 0 .00 RPM | 220 .68 RPM |
SRP017611_liver | 0 .00 RPM | 156 .48 RPM |
SRP040447_lung | 0 .00 RPM | 355 .56 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 353 .86 RPM |