RetrogeneDB ID: | retro_itri_1262 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393417.1:4062361..4062797(+) | ||
Located in intron of: | ENSSTOG00000004236 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL26 | ||
Ensembl ID: | ENSSTOG00000021923 | ||
Aliases: | None | ||
Description: | ribosomal protein L26 [Source:HGNC Symbol;Acc:10327] |
Percent Identity: | 64.38 % |
Parental protein coverage: | 97.93 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKV |
MKFNPFVTSDRSKN.KRHF..PSH..RKIMSS.LSKELR........PI.K..EVQVV..HY.GQQ.G.V | |
Retrocopy | MKFNPFVTSDRSKNHKRHFHTPSHKHRKIMSSSLSKELRTEAQWVTVPI*KEREVQVVQRHYEGQQTGQV |
Parental | VQVYRKKYVIYIE-RVQREKAN---GTTVHVGIHPSKVVITRLKLDKDRKKILERKAKSRQVGKEKGKYK |
.QVYRKK.V...E..VQREKAN...GTTV.V..HPSK.V.TR...DK..KKILE.KAKS.Q.GK.KG..K | |
Retrocopy | AQVYRKKGVMCFE>GVQREKANEADGTTVPVCTHPSKWVSTRPTVDKGLKKILEWKAKSSQIGKAKGRDK |
Parental | EETIEK |
EE.... | |
Retrocopy | EEATRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |