RetrogeneDB ID: | retro_mmus_2732 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:52118322..52118888(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081979 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps8 | ||
Ensembl ID: | ENSMUSG00000047675 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166] |
Percent Identity: | 78.97 % |
Parental protein coverage: | 91.83 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | RKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSW-GSECCTRKTRIIDVVYNAS |
RK.YH.KRKYELG.P.A.T.I.P...HT..V.GGNKKY.ALRLDVGNFSW...ECCTRKTRIIDVVY.AS | |
Retrocopy | RKRYHRKRKYELGQPGASTNIDP---HTFHV*GGNKKYHALRLDVGNFSW<APECCTRKTRIIDVVYKAS |
Parental | NNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR-KKGAK-LTPEEEEILNKKRSKKIQKKYDERKK |
NNELV.TKTL.KN.IVLID.TPY.Q..ESHYALPLG..K.G...LTPEEEEILNK.RSK..QKKYDERKK | |
Retrocopy | NNELVCTKTLTKNSIVLIDTTPYWQRFESHYALPLGQ>KEGGQ>LTPEEEEILNKNRSKNTQKKYDERKK |
Parental | NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVL-EGKELEFYLRKIKARKGK |
NAK.SSLLEEQ.Q..KLL.C.ASRPGQCGRADGYVL.EGKELEFYLRKIKARKGK | |
Retrocopy | NAKVSSLLEEQSQHSKLLVCVASRPGQCGRADGYVL>EGKELEFYLRKIKARKGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 63 .94 RPM |
SRP007412_cerebellum | 0 .00 RPM | 45 .81 RPM |
SRP007412_heart | 0 .03 RPM | 115 .74 RPM |
SRP007412_kidney | 0 .37 RPM | 96 .29 RPM |
SRP007412_liver | 0 .03 RPM | 88 .04 RPM |
SRP007412_testis | 0 .00 RPM | 46 .29 RPM |