RetrogeneDB ID: | retro_mmus_2847 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 6:83844766..83845097(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps8 | ||
Ensembl ID: | ENSMUSG00000047675 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:MGI Symbol;Acc:MGI:98166] |
Percent Identity: | 75. % |
Parental protein coverage: | 53.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVR-GGNKKYRALRLDVGNFSWGS |
MG.SRDNWHKR.KT.GKR..YHKK.KYELG.PAAN.K..PR..H....R.G..K.YRALR.DVGNFSWGS | |
Retrocopy | MGVSRDNWHKRCKTRGKRQCYHKKWKYELGQPAANIKTSPRCTHSLSLR>GSKK-YRALRFDVGNFSWGS |
Parental | ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQ |
.CCT.KTRIIDVVYNASN.ELV.TKTLVKN.IVLIDST.YR. | |
Retrocopy | QCCTHKTRIIDVVYNASNKELVHTKTLVKNSIVLIDSTWYRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 63 .94 RPM |
SRP007412_cerebellum | 0 .04 RPM | 45 .81 RPM |
SRP007412_heart | 0 .00 RPM | 115 .74 RPM |
SRP007412_kidney | 0 .00 RPM | 96 .29 RPM |
SRP007412_liver | 0 .00 RPM | 88 .04 RPM |
SRP007412_testis | 0 .05 RPM | 46 .29 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_125084 | 529 libraries | 487 libraries | 56 libraries | 0 libraries | 0 libraries |