RetrogeneDB ID: | retro_pcap_184 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_14230:36552..37291(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSPCAG00000012273 | ||
Aliases: | None | ||
Description: | DnaJ (Hsp40) homolog, subfamily A, member 1 [Source:HGNC Symbol;Acc:5229] |
Percent Identity: | 81.75 % |
Parental protein coverage: | 84.07 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | NCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQK |
.C...G.QIRIHQIGPGMV.QIQSVCME.QGHGE.ISPKDRC.SCNGRKIV.EK.IL..HIDKGMKDGQK | |
Retrocopy | HCYLPGVQIRIHQIGPGMVHQIQSVCMEYQGHGEQISPKDRCRSCNGRKIV*EK-ILQAHIDKGMKDGQK |
Parental | ITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVI-TSH |
.T.HGEGDQEP.LE.GDIIIVLDQKDHAVFTR.GE.LFM.MDIQLVE.LCGFQK..STL.N.TIVI.TSH | |
Retrocopy | LTLHGEGDQEPVLEVGDIIIVLDQKDHAVFTRLGENLFMWMDIQLVETLCGFQKLTSTLGN*TIVI<TSH |
Parental | PGQIVKHEDIKCVLNEGMPIYRRPYEKGR-LIIQFKVNFPENGFLSPDKLALLEKLLPERKEVEETDEMD |
P.QIVKHEDIKCVL.EGMPIY.RPYEKG..L.IQFKVNFPENGFLSPDKL.LLEKLLPERKEV.ET.EMD | |
Retrocopy | PTQIVKHEDIKCVLYEGMPIYHRPYEKGT<LVIQFKVNFPENGFLSPDKLVLLEKLLPERKEVKETGEMD |
Parental | QVELVDFDPNQERRRHYNGEA-YEDDDTDHH-PRGGVQCQTS |
QVELVDFDPNQERR.H.N.EA..E.DD..HH.PRG.VQ.QTS | |
Retrocopy | QVELVDFDPNQERRCHCNREA>VENDDPGHH<PRGEVQYQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |