RetrogeneDB ID: | retro_rnor_608 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:150606959..150607819(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Dnaja1 | ||
Ensembl ID: | ENSRNOG00000007029 | ||
Aliases: | Dnaja1, Hsj2 | ||
Description: | DnaJ homolog subfamily A member 1 [Source:UniProtKB/Swiss-Prot;Acc:P63036] |
Percent Identity: | 51.86 % |
Parental protein coverage: | 74.06 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | GKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQI |
GKN.....S...EDLYN...RKL..QK.VIC..CE....KKGA.E.....RGT.M.I.IHQ.GP.M.Q.I | |
Retrocopy | GKNGMCRFSPIMEDLYNSTIRKLSKQKKVICNECESGSCKKGAGEYL-KYRGTDM*IKIHQMGPEMAQ*I |
Parental | QSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVL |
...CME.Q..GE.ISP.DR.K..NG..IV.EK.IL.VHIDK.MK..QKITFHG.GD...GL.PGDII... | |
Retrocopy | WCMCMEWQNCGEQISPNDRSKISNGKNIVWEK-ILQVHIDKIMKNSQKITFHGKGDHKSGLKPGDIIMI- |
Parental | DQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRR |
DQ..HAVFT.R.E.L......Q.VEA.CGFQ.PIS.L...TI...S.PGQ.VKH.D.KCV.NE.MPIY.. | |
Retrocopy | DQNSHAVFT*R*ENLYINRNLQFVEAFCGFQEPISVLEQETIILASKPGQNVKHRDTKCVHNESMPIYCQ |
Parental | PYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVELVDFDPNQERRRHYNGEAYED |
P.E...LIIE.K..F.............L.....E..E..E.D...Q.ELV.FDPNQE....Y......D | |
Retrocopy | PHEEECLIIESKLSFTQKVLFFVCCNNSLQRGRKEVEEPKEMD---QRELVNFDPNQEKLYPYK-KNHKD |
Parental | DEHHPRGGVQ-CQTS |
..H..RG....CQTS | |
Retrocopy | NDHLLRGVLH<CQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 166 .73 RPM |
SRP017611_kidney | 0 .00 RPM | 214 .23 RPM |
SRP017611_liver | 0 .00 RPM | 176 .23 RPM |