RetrogeneDB ID: | retro_itri_809 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393326.1:4390513..4391190(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000005200 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 79.75 % |
Parental protein coverage: | 58.65 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | FKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVT |
FKQISQAYEVLSDAKKRE..DKG.E.AIKEGG..GGFGSPMDIF.MFFGGGGRMQRER.GKN...QLSV. | |
Retrocopy | FKQISQAYEVLSDAKKREFHDKG-E*AIKEGGTCGGFGSPMDIFNMFFGGGGRMQRERKGKNMC-QLSVM |
Parental | LEDLYN-GATRKLALQKNVICDKCEGRG-GKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQG |
LEDLY...ATRKLALQKNV..DKCEG.G.GKKG..ECCPNC.GTGM.IRIHQIG.GMVQQ.QSVCMECQG | |
Retrocopy | LEDLYK<SATRKLALQKNVL*DKCEGQG>GKKGTIECCPNCQGTGMKIRIHQIGSGMVQQNQSVCMECQG |
Parental | HGERISPKDR-CKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVF |
HGE.ISPKDR..K.CNGR.IV.E.KILEV.IDKGMKDGQKITFH.EGDQE.G....DI....DQKDHAVF | |
Retrocopy | HGEQISPKDR<MKNCNGRNIVQETKILEVYIDKGMKDGQKITFHDEGDQESG----DIVL--DQKDHAVF |
Parental | TRRGEDLFMCMDIQLVEALCGFQKPIS |
TR.G..LFMCMDIQ.VEAL.GFQKPIS | |
Retrocopy | TR*GDNLFMCMDIQVVEALGGFQKPIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |