RetrogeneDB ID: | retro_cjac_2763 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 6:123937898..123939086(+) | ||
Located in intron of: | ENSCJAG00000002896 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | DNAJA1 | ||
Ensembl ID: | ENSCJAG00000008022 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 93.95 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 0 |
Parental | MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQ |
MVKETTYYD.LGVKPNATQEELKK.YRKLA.KYHPDKNPNEGEKFKQISQAYEVLSDA.KRELYDKGGEQ | |
Retrocopy | MVKETTYYDALGVKPNATQEELKKDYRKLAFKYHPDKNPNEGEKFKQISQAYEVLSDANKRELYDKGGEQ |
Parental | AIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGR |
AIKEGGAGGG.GSPMDIFDMFFGGG.RMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKC.GR | |
Retrocopy | AIKEGGAGGGLGSPMDIFDMFFGGGRRMQRERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCKGR |
Parental | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEV |
GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCME.QGHGE.ISPKDRCKSCNGRKIV.EKKILEV | |
Retrocopy | GGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMERQGHGEWISPKDRCKSCNGRKIV*EKKILEV |
Parental | HIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL |
HIDKGMKDGQKITFHGE.DQEPGLE.GDIIIVLDQKDHAVFTR.GEDL..CMDIQLV.ALCGFQKPISTL | |
Retrocopy | HIDKGMKDGQKITFHGE*DQEPGLELGDIIIVLDQKDHAVFTR*GEDLSLCMDIQLV*ALCGFQKPISTL |
Parental | DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERK |
DNR.IVITSHPGQIVKHGDIKC.LNEGMPIY.RPYEKG.LIIEFKVNFPENGFLSPDKLSLLEKLL.ERK | |
Retrocopy | DNRAIVITSHPGQIVKHGDIKCILNEGMPIYYRPYEKGHLIIEFKVNFPENGFLSPDKLSLLEKLL-ERK |
Parental | EVEETDEMDQVELVDFDPNQERRRHYNGEAYEDDEHHPRGGVQCQTS |
EVEETDEMDQ.ELVDFDPNQER.RHYNGEAYEDDEHHPRGG.QCQTS | |
Retrocopy | EVEETDEMDQEELVDFDPNQERWRHYNGEAYEDDEHHPRGGIQCQTS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .20 RPM | 49 .90 RPM |
SRP051959_heart | 0 .19 RPM | 44 .97 RPM |
SRP051959_kidney | 0 .22 RPM | 74 .37 RPM |
SRP051959_liver | 0 .00 RPM | 102 .80 RPM |
SRP051959_lung | 0 .18 RPM | 74 .47 RPM |
SRP051959_lymph_node | 0 .16 RPM | 71 .32 RPM |
SRP051959_skeletal_muscle | 0 .13 RPM | 37 .74 RPM |
SRP051959_spleen | 0 .19 RPM | 75 .04 RPM |